Papers

 

2016

dvinge_2_2015

Dvinge H*, Kim E*, Abdel-Wahab O, Bradley RK. RNA splicing factors as oncoproteins and tumour suppressors . Nat Rev Cancer 2016 Jul;16(7):413-30 * Joint first authors

 

lee_2016Lee SC*, Dvinge H*, Kim E, Cho H, Micol JB, Chung YR, Durham BH, Yoshimi A, Kim YJ, Thomas M, Lobry C, Chen CW, Pastore A, Taylor J, Wang X, Krivtsov A, Armstrong SA, Palacino J, Buonamici S, Smith PG, Bradley RK, Abdel-Wahab O.  Modulation of splicing catalysis for therapeutic targeting of leukemia with mutations in genes encoding spliceosomal proteins.  Nat Med. 2016 Jun;22(6):672-8 * Joint first authors
See also.

2015

hickey_2015Hickey TE, Irvine CM, Dvinge H, Tarulli GA, Hanson AR, Ryan NK, Pickering MA, Birrell SN, Hu DG, Mackenzie PI, Russell R, Caldas C, Raj GV, Dehm SM, Plymate SR, Bradley RK, Tilley WD, Selth LA. Expression of androgen receptor splice variants in clinical breast cancers. Oncotarget 2015 Dec 29;6(42):44728-44

tcga_2015Cancer Genome Atlas Research Network. The Molecular Taxonomy of Primary Prostate Cancer. Cell 2015 Nov 5;163(4)

 

dvinge_2015Dvinge H, Bradley RK. Widespread intron retention diversifies most cancer transcriptomes. Genome Med. 2015 May 15;7(1)
See also.

 

robinson_2015Robinson D, Van Allen EM, et al. Integrative clinical genomics of advanced prostate cancer. Cell 2015 May 21;161(5)

2014

dvinge_2014Dvinge H, Ries RE, Ilagan JO, Stirewalt DL, Meshinchi S, Bradley RK. Sample processing obscures cancer-specific alterations in leukemic transcriptomes. Proc Natl Acad Sci 2014 Nov 25;111(47).
See also.

2013

dvinge_2013Dvinge H*, Git A*, Gräf S, Salmon-Divon M, Zhao Y, Hirst M, Armisen J, Miska EA, Chin S-F, Provenzano E, Turashvili G, Green A, Ellis I, Aparicio S, Caldas C. The shaping and functional consequence of the miRNA landscape in breast cancer. Nature 2013 May 16;497(7449) * Joint first authors

2012

metzakopian_2012Metzakopian E, Lin W, Salmon-Divon M, Dvinge H, Ericson J, Perlmann T, Whitsett JA, Bertone P, Ang S-L. Genome wide characterization of FoxA2 targets reveals positive regulation of floor plate genes and negative regulation of centro-lateral genes in midbrain dopaminergic progenitors. Development 2012 Jul;139(14).

2011

reynolds_2011Reynolds N, Salmon-Divon M, Dvinge H, Hynes-Allen A, Balasooriya G, Leaford D, Behrens A, Bertone P, Hendrich B. NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression. EMBO Journal 2011 Dec;431.

2010

divon_2010Salmon-Divon M, Dvinge H, Tammoja K, Bertone P. PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci. BMC Bioinformatics 2010 Aug;11(1):415.

 

git_2010Git A*, Dvinge H*, Salmon-Divon M*, Osborne M, Kutter C, Hadfield J, Bertone P, Caldas C. Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA 2010 May; 16(5):991-1006. * Joint first authors

2009

dvinge_2009Dvinge H, Bertone P. HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R. Bioinformatics 2009 Dec;25(24):3325-6.

 

tan_2009Tan DJ, Dvinge H, Christoforou A, Bertone P, Martinez Arias A, Lilley KS. Mapping organelle proteins and protein complexes in Drosophila melanogaster. J Proteome Res 2009 Jun;8(6):2667- 78.

2008

kirstetter_2008Kirstetter P, Schuster MB, Bereshchenko O, Moore S, Dvinge H, Kurz E, Theilgaard-Mönch K, Månsson R, Pedersen TA, Pabst T, Schrock E, Porse BT, Jacobsen SE, Bertone P, Tenen DG, Nerlov C. Modeling of C/EBPalpha mutant acute myeloid leukemia reveals a common expression signature of committed myeloid leukemia-initiating cells. Cancer Cell 2008 Apr;13(4):299-310.